花鲈肝脏hepcidin相关cDNA Hepc2的克隆及序列分析

Cloning and sequence analysis of hepcidin-like cDNA Hepc2 from liver of Lateolabrax japonicus

  • 摘要: Hepcidin(Hepc)是一类性质独特的抗菌肽,具有广谱的抗革兰氏阳性、阴性细菌和真菌等作用。利用RT-PCR和RACE等技术,从经过多种细菌攻毒的花鲈(Lateolabrax japonicus)肝组织中克隆出Hepc全长cDNA,命名为Hepc2,Genbank登录号为AY604195。Hepc2有581个碱基,其中阅读框有258个碱基,编码86个氨基酸。预测氨基酸序列和白鲈及其他鱼种在相同保守的区域有8个半胱氨酸,相对分子量为9418.55dal。在3’非编码区有225bp,包含终止密码子下游189nt处的多腺苷酸化AATAAA信号和212nt处的polyA信号。预测蛋白的信号肽断裂位点在第24和第25个密码子之间。通过与白鲈(Morone chrysops)、人和其他鱼种来源的Hepc cDNA和蛋白质同源性分析表明,从花鲈肝中分离的Hepc2 cDNA属于Hepc基因家族的新成员。

     

    Abstract: Hepcidin is a unique antimicrobial peptide which exerts broad-spectrum antimicrobial action against Gram-negative and Gram-positive bacteria,as well as fungi.A Hepc-like cDNA was amplified from the liver of Lateolabrax japonicus challenged with a mixed bacteria solution.Using RT-PCR and RACE with a specific primer pair,a full length cDNA sequence Hepc2 of the Hepc-like antimicrobial peptide (GenBank accession number:AY604195) was obtained.Hepc2 cDNA is composed of 581 bases,which contains an ORF of 258 bases,encoding 86 amino acids.The deduced amino acid sequence is conserved between white bass and other fish species,which share eight cysteines at the identical conserved position.The relative molecular weight of the protein is 9418.55dal.The 3′non-coding region is composed of 225bp,with a polyadenylation signal AATAAA sequence appearing at position 189 nt,and poly (A) tail at 212 nt, downstream codon TAA.The signal peptide cleavage site of its deduced protein is presumed between codon 24 and 25. High homologies with Hepc cDNAs and proteins of white bass (Morone chrysops),human and other fish are shown.It indicates that Hepc2 cDNA from Lateolabrax japonicus liver is a new member of the Hepc gene family.

     

/

返回文章
返回